Author

J. R. Casey

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Assay:metabolomics· 1

Frequent Co-Authors

A. E. White· 2 shared D. Muratore· 2 shared D. R. Mende· 2 shared E. V. Armbrust· 2 shared J. S. Weitz· 2 shared K. W. Becker· 2 shared R. A. Rodriguez-Gonzalez· 2 shared S. J. Beckett· 2 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersEcology

A. E. White

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2 papers

Recent·Most cited

Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre

S. J. Beckett, D. Demory, A. R. Coenen, J. R. Casey, M. Dugenne, C. L. Follett, P. Connell, M. C. G. Carlson, S. K. Hu, S. T. Wilson, D. Muratore, R. A. Rodriguez-Gonzalez, S. Peng, K. W. Becker, D. R. Mende, , J. S. Weitz

The paper develops multitrophic models to investigate top-down and bottom-up drivers of Prochlorococcus population dynamics in the North Pacific Subtropical Gyre, finding grazers are the primary top-down factor despite high viral densities.

bioRxiv · Jun 15, 2021Ecology

Community-scale Synchronization and Temporal Partitioning of Gene Expression, Metabolism, and Lipid Biosynthesis in Oligotrophic Ocean Surface Waters

D. Muratore, A. K. Boysen, M. J. Harke, K. W. Becker, J. R. Casey, S. N. Coesel, D. R. Mende, S. T. Wilson, F. O. Aylward, J. M. Eppley, A. Vislova, S. Peng, R. A. Rodriguez-Gonzalez, S. J. Beckett, E. V. Armbrust, , J. S. Weitz

The paper uses machine learning to analyze time series data from ocean surface waters, revealing synchronized and asynchronous gene expression patterns linked to diel cycles and microbial niche partitioning.

bioRxiv · May 15, 2020 · PreprintEcology