Author

D. R. Mende

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Ecology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:clustering· 2 Research Focus:differential expression· 2 Organism:E. coli· 2 Assay:metagenomics· 2 Assay:whole-genome sequencing· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

C. Schultsz· 3 shared A. E. White· 2 shared B. C. van der Putten· 2 shared COMBAT Consortium· 2 shared D. Muratore· 2 shared E. V. Armbrust· 2 shared J. R. Casey· 2 shared J. S. Weitz· 2 shared

Activity by Year

2020-2021 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersMicrobiology

C. Schultsz

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre

S. J. Beckett, D. Demory, A. R. Coenen, J. R. Casey, M. Dugenne, C. L. Follett, P. Connell, M. C. G. Carlson, S. K. Hu, S. T. Wilson, D. Muratore, R. A. Rodriguez-Gonzalez, S. Peng, K. W. Becker, D. R. Mende, , J. S. Weitz

The paper develops multitrophic models to investigate top-down and bottom-up drivers of Prochlorococcus population dynamics in the North Pacific Subtropical Gyre, finding grazers are the primary top-down factor despite high viral densities.

bioRxiv · Jun 15, 2021Ecology

Extraintestinal pathogenic Escherichia coli (ExPEC) are associated with prolonged carriage of extended-spectrum β-lactamase-producing E. coli acquired during travel

B. C. van der Putten, J. M. van Hattem, J. Penders, COMBAT Consortium, D. R. Mende, C. Schultsz

This study identifies extraintestinal pathogenic E. coli (ExPEC) as more likely to persist in travelers' intestines for over 12 months compared to other E. coli lineages.

bioRxiv · Sep 23, 2020 · PreprintMicrobiology

Community-scale Synchronization and Temporal Partitioning of Gene Expression, Metabolism, and Lipid Biosynthesis in Oligotrophic Ocean Surface Waters

D. Muratore, A. K. Boysen, M. J. Harke, K. W. Becker, J. R. Casey, S. N. Coesel, D. R. Mende, S. T. Wilson, F. O. Aylward, J. M. Eppley, A. Vislova, S. Peng, R. A. Rodriguez-Gonzalez, S. J. Beckett, E. V. Armbrust, , J. S. Weitz

The paper uses machine learning to analyze time series data from ocean surface waters, revealing synchronized and asynchronous gene expression patterns linked to diel cycles and microbial niche partitioning.

bioRxiv · May 15, 2020 · PreprintEcology

Internal Control for process monitoring of clinical metagenomic next-generation sequencing of urine samples

V. A. Janes, J. van der Laan, S. Matamoros, D. R. Mende, M. D. de Jong, C. Schultsz

The paper introduces an internal control method for metagenomic next-generation sequencing of urine samples to improve process control and reduce technical bias.

bioRxiv · Mar 27, 2020Microbiology

Escherichia ruysiae sp. nov., isolated from an international traveller

B. C. van der Putten, S. Matamoros, D. R. Mende, COMBAT Consortium, C. Schultsz

The paper isolates and characterizes a new Escherichia species, E. ruysiae, by genomic and phylogenetic analysis of a strain from an international traveller.

bioRxiv · Feb 19, 2020 · PreprintMicrobiology