Author

J. T. Atkinson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 4

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:protein folding & dynamics· 3 Assay:proteomics· 2 Approach:biophysical modeling· 1 Approach:deep learning· 1 Research Focus:protein design· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

J. J. Silberg· 3 shared A. M. Jones· 1 shared A. Truong· 1 shared D. Kahanda· 1 shared D. Myerscough· 1 shared G. N. Bennett· 1 shared G. N. Phillips· 1 shared I. Campbell· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersBiochemistry

J. J. Silberg

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4 papers

Recent·Most cited

The biochemical impact of extracting an embedded adenylate kinase domain using circular permutation

T. Coleman, J. Shin, J. J. Silberg, Y. Shamoo, J. T. Atkinson

This study examines how circular permutation of an adenylate kinase domain affects enzyme activity and stability in mesophilic and thermophilic AKs.

bioRxiv · Oct 25, 2023 · PreprintBiochemistry

Laboratory evolution identifies elongated flavodoxins that support electron transfer to sulfite reductases

A. Truong, D. Myerscough, I. Campbell, J. T. Atkinson, J. Silberg

The paper shows that flavodoxins can transfer electrons to sulfite reductases and identifies regions of insertion tolerance that influence their interaction with oxidoreductase partners.

bioRxiv · Feb 21, 2023 · PreprintBiochemistry

Prochlorococcus phage ferredoxin: structural characterization and electron transfer to cyanobacterial sulfite reductases

I. J. Campbell, J. L. Olmos, W. Xu, D. Kahanda, J. T. Atkinson, O. N. Sparks, M. D. Miller, G. N. Phillips, G. N. Bennett, J. J. Silberg

This study characterizes a phage ferredoxin from Prochlorococcus marinus, showing structural similarity to cyanobacterial ferredoxins and functional electron transfer to a host sulfite reductase.

bioRxiv · Feb 7, 2020Biochemistry

Family permutation profiling identifies a dynamic protein domain as functionally tolerant to increased conformational entropy

J. T. Atkinson, A. M. Jones, V. Nanda, J. J. Silberg

This study uses family permutation profiling and deep mutational scanning to show that high energetic frustration in protein domains correlates with increased tolerance to conformational entropy.

bioRxiv · Nov 14, 2019Biochemistry