Author

J.-Q. Chen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 1 Evolutionary Biology· 1 Pathology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 3 Research Focus:chromatin & epigenetic regulation· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

Q. Wang· 2 shared A. Suvarna· 1 shared B. Christensen· 1 shared D. Chen· 1 shared H. Li· 1 shared H.-X. Wu· 1 shared J. Levy· 1 shared J.-H. Tang· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersPlant Biology

Q. Wang

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Assessment of Emerging Pretraining Strategies in Interpretable Multimodal Deep Learning for Cancer Prognostication

Z. Azher, A. Suvarna, J.-Q. Chen, Z. Zhang, B. Christensen, L. Salas, L. Vaickus, J. Levy

This study evaluates pretraining strategies in an interpretable multimodal deep learning framework for cancer prognosis, showing that pretraining improves performance over standard methods.

bioRxiv · Nov 21, 2022Pathology

Gut Microbiome Contributes to Cold-climate Adaptation in Lizards

J.-Q. Chen, L.-W. Zhang, R.-M. Zhao, H.-X. Wu, L.-H. Lin, P. Li, H. Li, Y.-F. Qu, X. Ji

The paper investigates how gut microbiota contributes to cold-climate adaptation in two lizard species, finding species-specific differences in microbial composition and metabolic gene abundance.

bioRxiv · Feb 14, 2022 · PreprintEcology

An angiosperm NLR atlas reveals that NLR gene reduction is associated with ecological specialization and signal transduction component deletion

Y. Liu, Z. Zeng, Q. Li, X.-M. Jiang, Z. Jiang, J.-H. Tang, Y.-M. Zhang, D. Chen, Q. Wang, J.-Q. Chen, Z.-Q. Shao

bioRxiv · Feb 10, 2021Plant Biology

Widespread positive selection for mRNA secondary structure at synonymous sites in domesticated yeast

M. Yu, W. Guo, Q. Wang, J.-Q. Chen

The paper investigates positive selection for mRNA secondary structure at synonymous sites in domesticated yeast, finding that GC content and structure influence translational efficiency and adaptation.

bioRxiv · Jun 27, 2019 · PreprintEvolutionary Biology