Author

Jaakko Vuohtoniemi

University of Helsinki

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Jarno AlankoiD· 2 shared Simon J. PuglisiiD· 2 shared Tommi MäkliniD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBioinformatics

Jarno AlankoORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedMay 24, 2023

Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes

Jarno Alanko, Jaakko Vuohtoniemi, Tommi Mäklin, Simon J. Puglisi

Themisto is a scalable k-mer index for pseudoalignment against bacterial genomes, outperforming existing tools in speed, memory use, and recall.

54 citationstop 3%

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 19, 2022

Succinct k-mer Sets Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform

Jarno Alanko, Simon J. Puglisi, Jaakko Vuohtoniemi

This paper introduces the Spectral Burrows-Wheeler Transform (SBWT) and develops succinct index structures for efficient k-spectrum membership queries in genomic data.

6 citations

statistical model

𝕏 PostBluesky