New method to reconstruct phylogenetic and transmission trees with sequence data from infectious disease outbreaks
Don Klinkenberg, Jantien Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga
The paper develops a Bayesian method to reconstruct transmission trees from WGS data by integrating unobserved processes, showing improved results on simulated and real datasets.
bioRxiv · Aug 12, 2016Epidemiology