Author

Jacob Lusk

University of California, Davis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Mariel VázqueziD· 2 shared Nataša JonoskaiD· 2 shared Frederic L. ChediniD· 1 shared Georgina Gonzalez-Isunza· 1 shared Manda RiehliD· 1 shared Margherita Maria FerrariiD· 1 shared Pengyu LiuiD· 1 shared Stella R. HartonoiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 30 mutual co-author links

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2 shared papersGenomics

Mariel VázquezORCID

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2 papers

Recent·Most cited

The R-loop Grammar predicts R-loop formation under different topological constraints

Margherita Maria Ferrari, Svetlana Poznanović, Manda Riehl, Jacob Lusk, Stella R. Hartono, Georgina Gonzalez-Isunza, Frederic L. Chedin, Mariel Vázquez, Nataša Jonoska

The paper introduces an R-loop grammar to predict R-loop formation using sequence data and shows it outperforms previous methods across different DNA topologies.

PLoS Computational Biology · Aug 29, 2025Peer-reviewedGenomics

Analyzing the link between RNA secondary structures and R-loop formation with tree polynomials

Pengyu Liu, Jacob Lusk, Nataša Jonoska, Mariel Vázquez

This study links RNA secondary structure to R-loop formation using tree-polynomial representations, identifying structural features predictive of R-loop formation.

bioRxiv · Sep 24, 2023 · PreprintMolecular Biology