Author

Pengyu Liu

Simon Fraser UniversityORCID 0000-0001-7154-7546Unclaimed ORCID profile · follow to get notified of new preprints

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Pengyu Liu1 paper

Biology Disciplines

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Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Caroline ColijniD· 1 shared Jacob Lusk· 1 shared Mariel VázqueziD· 1 shared Matthew Gould· 1 shared Nataša JonoskaiD· 1 shared Priscila do Nascimento BilleriD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 6 mutual co-author links

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1 shared paperSystems Biology

Caroline ColijnORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintSep 24, 2023

Analyzing the link between RNA secondary structures and R-loop formation with tree polynomials

Pengyu Liu, Jacob Lusk, Nataša Jonoska, Mariel Vázquez

This study links RNA secondary structure to R-loop formation using tree-polynomial representations, identifying structural features predictive of R-loop formation.

DOI 10.1101/2023.09.24.559224

bulk RNA-seqstatistical model

𝕏 PostBluesky

Systems BiologybioRxivPreprintFeb 10, 2020

Polynomial Phylogenetic Analysis of Tree Shapes

Pengyu Liu, Priscila do Nascimento Biller, Matthew Gould, Caroline Colijn

This paper introduces a polynomial-based method to compare phylogenetic tree shapes and applies it to simulated and real data to estimate parameters and select models.

4 citations

statistical modelbenchmarking

𝕏 PostBluesky