Modeling time-series data from microbial communities
Benjamin J Ridenhour, Sarah L Brooker, Janet E Williams, James T Van Leuven, Aaron W Miller, M Denise Dearing, Christopher H Remien
The paper introduces a Poisson regression method with elastic-net penalty to infer ecological interactions from microbial time-series data, applied to gut microbiome data from woodrats.
bioRxiv · Aug 24, 2016Microbiology