Author

Jason Murray

Dana-Farber Cancer Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Assay:Hi-C· 1 Organism:human· 1 Assay:imaging· 1 Organism:mouse· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Alvaro Quintanal Villalonga· 1 shared Angeliki KaratzaiD· 1 shared Åsa SegerstolpeiD· 1 shared Aviv RegeviD· 1 shared Bo LiiD· 1 shared Charles M. RudiniD· 1 shared Charles S. ComiteriD· 1 shared Collin M. StultziD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Alvaro Quintanal Villalonga

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1 paper

Recent·Most cited

Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)

Charles S. Comiter, Xingjian Chen, Eeshit Dhaval Vaishnav, Koseki J. Kobayashi-Kirschvink, Metamia Ciampricotti, Ke Zhang, Jason Murray, Francesco Monticolo, Jianhuan Qi, Ryota Tanaka, Sonia E. Brodowska, Bo Li, Yiming Yang, Scott J. Rodig, Angeliki Karatza, , Aviv Regev

SCHAF generates spatially resolved single-cell transcriptomes from H&E histology images using vision transformers and adversarial learning, showing good agreement with ground-truth data.

bioRxiv · Mar 21, 2023 · PreprintBioinformatics