Author

Ryota Tanaka

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Assay:Hi-C· 1 Organism:human· 1 Assay:imaging· 1 Organism:mouse· 1

Frequent Co-Authors

Alvaro Quintanal Villalonga· 1 shared Angeliki KaratzaiD· 1 shared Åsa SegerstolpeiD· 1 shared Aviv RegeviD· 1 shared Bo LiiD· 1 shared Charles M. RudiniD· 1 shared Charles S. ComiteriD· 1 shared Collin M. StultziD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Alvaro Quintanal Villalonga

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2 papers

Recent·Most cited

In vitro one-pot construction of influenza viral genomes for virus particle synthesis based on reverse genetics system

Ryota Tanaka, Kenji Tamao, Mana Ono, Seiya Yamayoshi, Yoshihiro Kawaoka, Masayuki Su’etsugu, Hiroyuki Noji, Kazuhito V. Tabata

This study develops a rapid in vitro one-pot plasmid construction method for influenza virus synthesis, reducing plasmid construction time from days to 8 hours with comparable yield and accuracy.

PLoS ONE · Nov 8, 2024Peer-reviewedSynthetic Biology

Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)

Charles S. Comiter, Xingjian Chen, Eeshit Dhaval Vaishnav, Koseki J. Kobayashi-Kirschvink, Metamia Ciampricotti, Ke Zhang, Jason Murray, Francesco Monticolo, Jianhuan Qi, Ryota Tanaka, Sonia E. Brodowska, Bo Li, Yiming Yang, Scott J. Rodig, Angeliki Karatza, , Aviv Regev

SCHAF generates spatially resolved single-cell transcriptomes from H&E histology images using vision transformers and adversarial learning, showing good agreement with ground-truth data.

bioRxiv · Mar 21, 2023 · PreprintBioinformatics