Author
Commissariat à l'Énergie Atomique et aux Énergies Alternatives
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
4 papers
Recent·Most cited
Jianshu Zhao, Jean Pierre Both, Rob D. Knight
The paper introduces GraphEmbed, a scalable network embedding tool that efficiently handles large biological datasets with speed and accuracy improvements over existing methods.
Jianshu Zhao, Jean Pierre Both, Luis M. Rodriguez‐R, Konstantinos T. Konstantinidis
GSearch efficiently searches and classifies microbial or viral genomes using k-mer hashing and HNSW graphs, achieving high speed and accuracy with low memory usage.
Jianshu Zhao, Xiaofei Zhao, Jean Pierre Both, Konstantinos T. Konstantinidis
BinDash 2.0 improves genome comparison speed using new MinHash algorithms and SIMD optimizations, achieving faster and accurate large-scale genomic distance estimation.
Jianshu Zhao, Jean Pierre Both, Konstantinos T. Konstantinidis
This paper introduces an improved non-linear dimension reduction algorithm using HNSW for nearest neighbor search and applies it to visualize large-scale biological data with competitive accuracy.