Improving on hash-based probabilistic sequence classification using multiple spaced seeds and multi-index Bloom filters
Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah K. Yeo, İnanç Birol
The paper introduces a multi-index Bloom filter for alignment-free sequence classification, showing improved sensitivity and efficiency over existing methods in read binning and taxonomic assignment.
bioRxiv · Oct 5, 2018 · PreprintBioinformatics