Survey of metaproteomics software tools for functional microbiome analysis.
Ray Sajulga, Caleb Easterly, Michael E. Riffle, Bart Mesuere, Thilo Muth, Subina Mehta, Praveen Kumar, James E. Johnson, Bjoern Gruening, Henning Schiebenhoefer, Carolin A. Kolmeder, Stephan Fuchs, Brook L. Nunn, Joel D. Rudney, Timothy J. Griffin, Pratik Dilip Jagtap
This paper evaluates six metaproteomics tools for functional annotation using GO terms, finding differences in sensitivity and specificity, and integrates two into Galaxy for broader accessibility.
PLoS ONE · Nov 10, 2020Peer-reviewedBioinformatics