Author

Bjoern Gruening

University of Freiburg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Anton NekrutenkoiD· 1 shared Aysam GuerleriD· 1 shared Bart MesuereiD· 1 shared Brook L. NunniD· 1 shared Caleb EasterlyiD· 1 shared Carolin A. Kolmeder· 1 shared Dannon BakeriD· 1 shared Dave BouvieriD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Anton NekrutenkoORCID

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2 papers

Recent·Most cited

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy

Aysam Guerler, Dannon Baker, Marius van den Beek, Bjoern Gruening, Dave Bouvier, Nate Coraor, Stephen D. Shank, Jordan D. Zehr, Michael C. Schatz, Anton Nekrutenko

The paper presents a pipeline for predicting genome-wide protein-protein interactions and generating structural models, validated on human and yeast genomes and applied to SARS-CoV2 proteins.

BMC Bioinformatics · Jun 23, 2023Peer-reviewedGenomics

Survey of metaproteomics software tools for functional microbiome analysis.

Ray Sajulga, Caleb Easterly, Michael E. Riffle, Bart Mesuere, Thilo Muth, Subina Mehta, Praveen Kumar, James E. Johnson, Bjoern Gruening, Henning Schiebenhoefer, Carolin A. Kolmeder, Stephan Fuchs, Brook L. Nunn, Joel D. Rudney, Timothy J. Griffin, Pratik Dilip Jagtap

This paper evaluates six metaproteomics tools for functional annotation using GO terms, finding differences in sensitivity and specificity, and integrates two into Galaxy for broader accessibility.

PLoS ONE · Nov 10, 2020Peer-reviewedBioinformatics