Henning Schiebenhoefer

ProteoDUDes: Taxonomic profiling for metaproteomics with false positive reduction

ProteoDUDes improves taxonomic profiling in metaproteomics by reducing false positives, achieving higher accuracy in identifying active organisms in complex samples.

MegaGO: a fast yet powerful approach to assess functional similarity across meta-omics data sets

MegaGO assesses functional similarity between meta-omics datasets using semantic GO term similarity, offering fast and scalable analysis.

CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance

CovRadar provides a platform for tracking and filtering SARS-CoV-2 mutations in the spike gene, enabling users to analyze and visualize mutational changes and spatio-temporal distributions.

Survey of metaproteomics software tools for functional microbiome analysis.

This paper evaluates six metaproteomics tools for functional annotation using GO terms, finding differences in sensitivity and specificity, and integrates two into Galaxy for broader accessibility.