Learning the Unseen: Data-Augmented Deep Learning for PTM Discovery with Prosit-PTM
Wassim Gabriel, Daniel Paul Zolg, Victor Giurcoiu, Omar Osama Shouman, Polina Prokofeva, Florian Seefried, Florian P Bayer, Ludwig Lautenbacher, Armin Soleymaniniya, Karsten Schnatbaum, Johannes Zerweck, Tobias Knaute, Bernard Delanghe, Andreas F. R. Hühmer, Holger Wenschuh, , Mathias Wilhelm
This paper introduces Prosit-PTM, a deep learning model for PTM discovery that improves zero-shot prediction using a synthetic dataset and chemically-informed encoding.
bioRxiv · Nov 7, 2025 · PreprintBioinformatics