Author

John SJ Anderson

Fred Hutch Cancer Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:software / tool· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Allison W LiiD· 1 shared Anderson Fernandes BritoiD· 1 shared Cornelius RoemeriD· 1 shared Denise KühnertiD· 1 shared Emma B. HodcroftiD· 1 shared I. A. JoiaiD· 1 shared Ivan AksamentoviD· 1 shared James HadfieldiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperBioinformatics

Allison W LiORCID

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Author profile →

1 paper

Recent·Most cited

Nextstrain automates real-time phylogenetic analysis of open data for endemic and emerging pathogens

Kimberly R. Andrews, Jennifer Chang, Cornelius Roemer, James Hadfield, Victor Lin, Anderson Fernandes Brito, Richard Olumide Daodu, I. A. Joia, Kathryn E. Kistler, Allison W Li, Louise H. Moncla, Miguel I. Paredes, Denise Kühnert, Laura Marcela Torres, Laura Voitl, , Trevor Bedford

Standardized Snakemake pipelines on GitHub Actions fetch open sequence data, curate it, and publish daily or weekly updated phylogenies for 21 viruses and Mycobacterium tuberculosis.

bioRxiv · Jul 17, 2026 · PreprintBioinformatics✦ In-depth digest