Author

Miguel I. Paredes

Fred Hutch Cancer CenterORCID 0000-0002-9712-1663Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Alexandre JourdoniD· 1 shared Alice Maria GianiiD· 1 shared Allison W LiiD· 1 shared Alvaro DuqueiD· 1 shared Anderson Fernandes BritoiD· 1 shared Andrew T.N. TebbenkampiD· 1 shared Carlo ColantuoniiD· 1 shared Cornelius RoemeriD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperNeuroscience

Alexandre JourdonORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Nextstrain automates real-time phylogenetic analysis of open data for endemic and emerging pathogens

Kimberly R. Andrews, Jennifer Chang, Cornelius Roemer, James Hadfield, Victor Lin, Anderson Fernandes Brito, Richard Olumide Daodu, I. A. Joia, Kathryn E. Kistler, Allison W Li, Louise H. Moncla, Miguel I. Paredes, Denise Kühnert, Laura Marcela Torres, Laura Voitl, , Trevor Bedford

Standardized Snakemake pipelines on GitHub Actions fetch open sequence data, curate it, and publish daily or weekly updated phylogenies for 21 viruses and Mycobacterium tuberculosis.

bioRxiv · Jul 17, 2026 · PreprintBioinformatics✦ In-depth digest

Early Developmental Origins of Cortical Disorders Modeled in Human Neural Stem Cells

Xoel Mato-Blanco, Suel–Kee Kim, Alexandre Jourdon, Shaojie Ma, Sang-Hun Choi, Alice Maria Giani, Miguel I. Paredes, Andrew T.N. Tebbenkamp, Fuchen Liu, Alvaro Duque, Flora Maria Vaccarino, Nenad Šestan, Carlo Colantuoni, PASKO T. RAKIC, Gabriel Santpere, Nicola Micali

The temporal analysis of gene regulatory networks in human neural stem cells reveals multiple early critical phases associated with cortical disorders and neuropsychiatric traits.

Nature Communications · Jul 9, 2025Peer-reviewedNeuroscience