Author

Jonathan Allen

University Health NetworkPrimary ORCID profile (0000-0002-4359-8263 · 7 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Jonathan AlleniD7 papers · Lawrence Livermore National Laboratory

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Ankita BurmaniD· 1 shared Gavin W. WilsoniD· 1 shared Grégory BerraiD· 1 shared Jonathan YeungiD· 1 shared Melinda Solomon· 1 shared S. JuvetiD· 1 shared Shaf H KeshavjeeiD· 1 shared Tatsuaki WatanabeiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Ankita BurmanORCID

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1 paper

Recent·Most cited

Distinct fibrotic, epithelial and immune transcriptomic programs in phenotypes of chronic lung allograft dysfunction

Tsukasa Ishiwata, Grégory Berra, Jonathan Allen, Ankita Burman, Gavin W. Wilson, Zoeen Carter, Tatsuaki Watanabe, Melinda Solomon, Shaf H Keshavjee, Jonathan Yeung, S. Juvet, Tereza Martinu

The paper identifies distinct transcriptomic signatures in chronic lung allograft dysfunction phenotypes using bulk RNA sequencing and non-negative matrix factorization.

bioRxiv · May 28, 2026 · PreprintBioinformatics