Author

Josh Quick

University of Birmingham

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Approach:experimental assay· 3 Research Focus:database / resource· 2 Research Focus:genome assembly· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Adam M. PhillippyiD· 2 shared Arang RhieiD· 2 shared Benedict PateniD· 2 shared Karen H. MigaiD· 2 shared Matthew LooseiD· 2 shared Nicholas James LomaniD· 2 shared Sergey KoreniD· 2 shared Aaron Quinlan· 1 shared

Activity by Year

2014-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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2 shared papersBioinformatics

Adam M. PhillippyORCID

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Author profile →

4 papers

Recent·Most cited

Genomic Sequencing of SARS-COV-2 in Rwanda: evolution and regional dynamics

Yvan Butera, Enatha Mukantwari, Maria Artesi, Jeanne d’Arc Umuringa, Aine Niamh O’Toole, Verity Hill, Stefan Rooke, Samuel Leandro Hong, Simon Dellicour, Onesphore Majyambere, Sébastien Bontems, Bouchra Boujemla, Josh Quick, Paola Cristina Resende, Nick Loman, , Nadine Rujeni

This study analyzes SARS-CoV-2 genomic sequences from Rwanda to track variant evolution and regional spread, identifying emerging sub-lineages and VOCs introduced through travel.

Nature Communications · Sep 29, 2021Peer-reviewedGenetic & Genomic Medicine

Telomere-to-telomere assembly of a complete human X chromosome

Karen H. Miga, Sergey Koren, Arang Rhie, Mitchell Robert Vollger, Ariel Gershman, Andrey V. Bzikadze, Shelise Y. Brooks, Edmund Howe, David Porubskỳ, Glennis A. Logsdon, Valérie Schneider, Tamara Potapova, Jonathan M. D. Wood, William Chow, Joel C. Armstrong, , Adam M. Phillippy

The paper presents a gapless, telomere-to-telomere assembly of the human X chromosome using ultra-long-read nanopore sequencing and complementary technologies.

Nature · Jul 14, 2020Peer-reviewedBioinformatics

Nanopore sequencing and assembly of a human genome with ultra-long reads

Miten Jain, Sergey Koren, Karen H. Miga, Josh Quick, Arthur C Rand, Thomas A. Sasani, John R. Tyson, Andrew David Beggs, Alexander Dilthey, Ian T. Fiddes, Sunir Malla, Hannah Marriott, Tom Nieto, Justin O’Grady, Hugh E. Olsen, , Matthew Loose

Nanopore-only sequencing of GM12878 across 39 MinION flowcells (91.2 Gb) yielded an assembly with NG50 ∼3 Mb; adding 5× ultra-long reads raised NG50 to 6.4 Mbp.

Nature Biotechnology · Jan 29, 2018Peer-reviewedGenomics✦ In-depth digest

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

Josh Quick, Aaron Quinlan, Nicholas Loman

The paper presents a reference bacterial genome dataset generated using the MinION™ sequencer for Escherichia coli K-12 substr. MG1655, including base-called sequences and raw event data for method development.

bioRxiv · Sep 26, 2014Genomics