Author

Tom Nieto

University of BirminghamORCID 0000-0002-7280-9138Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Andrew David BeggsiD· 2 shared Louise J. TeeiD· 2 shared Aaron R. QuinlaniD· 1 shared Adam M. PhillippyiD· 1 shared Alexander DiltheyiD· 1 shared Arang RhieiD· 1 shared Arthur C Rand· 1 shared Benedict PateniD· 1 shared

Activity by Year

2017-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersGenomics

Andrew David BeggsORCID

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2 papers

Recent·Most cited

Nanopore sequencing and assembly of a human genome with ultra-long reads

Miten Jain, Sergey Koren, Karen H. Miga, Josh Quick, Arthur C Rand, Thomas A. Sasani, John R. Tyson, Andrew David Beggs, Alexander Dilthey, Ian T. Fiddes, Sunir Malla, Hannah Marriott, Tom Nieto, Justin O’Grady, Hugh E. Olsen, , Matthew Loose

Nanopore-only sequencing of GM12878 across 39 MinION flowcells (91.2 Gb) yielded an assembly with NG50 ∼3 Mb; adding 5× ultra-long reads raised NG50 to 6.4 Mbp.

Nature Biotechnology · Jan 29, 2018Peer-reviewedGenomics✦ In-depth digest

Whole genome methylation analysis of non-dysplastic Barretts oesophagus that progresses to invasive cancer

MP Dilworth, Tom Nieto, JD Stockton, Celina Whalley, Louise J. Tee, JD James, M T Hallissey, Rahul K. Hejmadi, N Trugdill, Olga Tucker, Andrew David Beggs

The paper identifies methylation markers that distinguish non-dysplastic Barrett's oesophagus patients who progress to cancer from those that do not.

bioRxiv · Mar 6, 2017 · PreprintGenomics