Author

Judith Risse

Netherlands Institute of Ecology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Marian Thomson· 2 shared Mark BlaxteriD· 2 shared Mick WatsoniD· 2 shared A. Christa MatemaniD· 1 shared Agata S. Pijl· 1 shared Bernice SepersiD· 1 shared Garry Blakely· 1 shared Georgios KoutsovoulosiD· 1 shared

Activity by Year

2014-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersGenomics

Marian Thomson

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Author profile →

3 papers

Recent·Most cited

Fishing pressure induces changes in DNA methylation in genetically homogeneous marine metapopulations

Margarida Barcelo‐Serra, A. Christa Mateman, Agata S. Pijl, Judith Risse, Bernice Sepers, Miquel Angel Cortes Pujol, Josep Alós, Kees van Oers

The paper shows fishing pressure leads to DNA methylation changes in marine fish, independent of age effects, suggesting epigenetic adaptation under strong selection.

Philosophical Transactions of the Royal Society B Biological Sciences · Jul 23, 2026Peer-reviewedMolecular Biology

A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data

Judith Risse, Marian Thomson, Garry Blakely, Georgios Koutsovoulos, Mark Blaxter, Mick Watson

The paper assembles a single chromosome of Bacteroides fragilis strain BE1 using Illumina and MinION data, achieving a gapless genome with minimal resources.

bioRxiv · Aug 11, 2015Genomics

poRe: an R package for the visualization and analysis of nanopore sequencing data

Mick Watson, Marian Thomson, Judith Risse, Javier Santoyo-Lopez, Richard Talbot, Karim Gharbi, Mark Blaxter

poRe is an R package for handling nanopore sequencing data, offering data manipulation, organization, summarization, and visualization across Windows and Linux platforms.

Bioinformatics · Aug 29, 2014Peer-reviewedBioinformatics