Author

Karim Gharbi

Primary ORCID profile (0000-0003-1092-4488 · 14 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Karim GharbiiD14 papers · Norwich Research Park

Biology Disciplines

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Evolutionary Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1 Assay:long-read sequencing· 1 Organism:mouse· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Bernhard GschloessliD· 2 shared Mathieu GautieriD· 2 shared Anne LoiseauiD· 1 shared Arnaud EstoupiD· 1 shared Audrey Rohfritsch· 1 shared Aurélien Ausset· 1 shared Benjamin Prud’homme· 1 shared Benoit Facon· 1 shared

Activity by Year

2014-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersEvolutionary Biology

Bernhard GschloesslORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

The genomic basis of colour pattern polymorphism in the harlequin ladybird

Mathieu Gautier, Junichi Yamaguchi, Julien Foucaud, Anne Loiseau, Aurélien Ausset, Benoit Facon, Bernhard Gschloessl, Jacques Lagnel, Etienne Loire, Hugues Parrinello, Dany Severac, Celine Lopez-Roques, Cecile Donnadieu, Maxime Manno, Helene Berges, , Benjamin Prud’homme

This study identifies the gene pannier as controlling melanic pattern polymorphism in the harlequin ladybird through cis-regulatory allelic variation.

bioRxiv · Jun 13, 2018 · PreprintEvolutionary Biology

Population genomics of bank vole populations reveals associations between immune related genes and the epidemiology of Puumala hantavirus in Sweden

Audrey Rohfritsch, Maxime Galan, Mathieu Gautier, Karim Gharbi, Gert Olsson, Bernhard Gschloessl, Caroline Zeimes, Sophie VanWambeke, Renaud Vitalis, Nathalie Charbonnel

The paper investigates genetic associations between immune-related genes and Puumala hantavirus epidemiology in bank voles across Sweden.

bioRxiv · Jun 9, 2017 · PreprintEvolutionary Biology

poRe: an R package for the visualization and analysis of nanopore sequencing data

Mick Watson, Marian Thomson, Judith Risse, Javier Santoyo-Lopez, Richard Talbot, Karim Gharbi, Mark Blaxter

poRe is an R package for handling nanopore sequencing data, offering data manipulation, organization, summarization, and visualization across Windows and Linux platforms.

Bioinformatics · Aug 29, 2014Peer-reviewedBioinformatics