Author

Julia Bowden

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Approach:matrix factorization· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Ashley P. TsangiD· 1 shared Ben Kinny-Köster· 1 shared David L. ZhouiD· 1 shared Elana Judith FertigiD· 1 shared Elizabeth M. JaffeeiD· 1 shared Emily F. Davis-MarcisakiD· 1 shared Genevieve Stein-O’BrieniD· 1 shared Jacob T. MitchelliD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperSystems Biology

Ashley P. TsangORCID

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1 paper

Recent·Most cited

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R, and GenePattern Notebook implementations of CoGAPS

Jeanette Johnson, Ashley P. Tsang, Jacob T. Mitchell, David L. Zhou, Julia Bowden, Emily F. Davis-Marcisak, Thomas D. Sherman, Ted Liefeld, Melanie Loth, Loyal A. Goff, Jacquelyn W. Zimmerman, Ben Kinny-Köster, Elizabeth M. Jaffee, Pablo Tamayo, Jill P. Mesirov, , Genevieve Stein-O’Brien

The paper introduces computational tools for NMF analysis of single-cell RNA-seq data, demonstrating their use in quantifying cell state transitions in pancreatic cancer.

Nature Protocols · Nov 21, 2023Peer-reviewedSystems Biology