Author

Justin M Zook

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Organism:human· 2 Research Focus:variant calling· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Arend SidowiD· 3 shared Noah SpiesiD· 3 shared David Catoe· 2 shared Jennifer McDanieliD· 2 shared Marc SalitiD· 2 shared Ziming WengiD· 2 shared Alex Bishara· 1 shared Alex Hastie· 1 shared

Activity by Year

2015-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersGenomics

Arend SidowORCID

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3 papers

Recent·Most cited

Genome-wide reconstruction of complex structural variants using read clouds

Noah Spies, Ziming Weng, Alex Bishara, Jennifer McDaniel, David Catoe, Justin M Zook, Marc Salit, Robert B West, Serafim Batzoglou, Arend Sidow

This paper introduces GROC-SVs, a method for detecting and assembling structural variants using read cloud data, showing improved specificity and enabling complex breakpoint reconstruction in cancer samples.

bioRxiv · Sep 10, 2016Genomics

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Justin M Zook, David Catoe, Jennifer McDaniel, Lindsay Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Chris Mason, Noah Alexander, Dhruva Chandramohan, Elizabeth Henaff, Feng Chen, Erich Jaeger, Ali Moshrefi, , Sofia K

The paper presents extensive sequencing data from seven human genomes to serve as benchmark reference materials for improving sequencing technologies and variant calling.

bioRxiv · Dec 23, 2015Genomics

svviz: a read viewer for validating structural variants

Noah Spies, Justin M Zook, Marc Salit, Arend Sidow

svviz validates structural variants by visualizing relevant reads aligned to candidate SV alleles, enabling evidence assessment and breakpoint refinement.

bioRxiv · Mar 7, 2015Genomics