AbDesign: Database of point mutants of antibodies with associated structures reveals poor generalization of binding predictions from machine learning models.
Bartosz Janusz, Dawid Chomicz, Samuel Demharter, Marloes Arts, Jurrian K. de Kanter, Yano Wilke, Helena Britze, Sonia Wrobel, Tomasz Gawłowski, Paweł Dudzic, Kärt Ukkivi, Lauri Peil, Roberto Spreafico, Konrad Krawczyk
The paper creates a dataset of antibody-antigen complexes with mutations and evaluates affinity prediction methods, finding that current models poorly predict binding effects compared to empirical methods.
mAbs · Oct 8, 2025Peer-reviewedBioinformatics