Tomasz Gawłowski

NAStructuralDB : Structural database to facilitate computational studies of molecular modeling and recognition of proteins with special focus on antibody-antigen interactions.

NAStructuralDB provides a processed dataset of antibody, Nanobody, and protein structures with molecular contact information and annotations to aid in predictive tasks.

AbDesign: Database of point mutants of antibodies with associated structures reveals poor generalization of binding predictions from machine learning models.

The paper creates a dataset of antibody-antigen complexes with mutations and evaluates affinity prediction methods, finding that current models poorly predict binding effects compared to empirical methods.

RIOT - Rapid Immunoglobulin Overview Tool - annotation of nucleotide and amino acid immunoglobulin sequences using an open germline database.

RIOT annotates immunoglobulin sequences by handling nucleotide and amino acid data, using an open germline database, and improving speed and accuracy over existing tools.