Author

K. D. Dubey

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 3

Signature Assays, Organisms & Methods

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Approach:biophysical modeling· 2 Research Focus:protein folding & dynamics· 2 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:protein structure· 1

Frequent Co-Authors

A. Tripathi· 1 shared R. K. Tiwari· 1 shared R. P. Ojha· 1 shared S. A. Siddiqui· 1 shared S. T. G· 1 shared V. Pandey· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 4 mutual co-author links

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1 shared paperBiochemistry

A. Tripathi

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3 papers

Recent·Most cited

Unravelling Key Interactions and the Mechanism of Demethylation during hAGT mediated DNA Repair via Simulations

S. T. G, S. A. Siddiqui, K. D. Dubey

The paper uses simulations to study DNA repair by hAGT, revealing key interactions and a new demethylation mechanism involving Tyr114.

bioRxiv · Jul 26, 2022 · PreprintBiochemistry

Combined MD and QM/MM Calculations reveal Allostery Driven Promiscuity in Dipeptide Epimerases of Enolase Family

A. Tripathi, K. D. Dubey

The paper shows how a mutation far from the active site can induce conformational changes to enhance enzyme promiscuity through allostery.

bioRxiv · May 1, 2022Biochemistry

Does Antibody Stabilize the Ligand Binding in GP120 of HIV-1 Envelope Protein? Evidence from MD Simulation

V. Pandey, R. K. Tiwari, R. P. Ojha, K. D. Dubey

The paper uses MD simulations to investigate how an antibody affects the conformational flexibility of gp120 induced by a CD4-mimetic inhibitor, showing enhanced NBD-557 affinity.

bioRxiv · Apr 1, 2019 · PreprintBiochemistry