Author

K. Shalchian-Tabrizi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

R. J. S. Orr· 2 shared A. K. Krabberod· 1 shared A. Wold-Dobbe· 1 shared A. Yabuki· 1 shared D. Bass· 1 shared D. Klaveness· 1 shared I. J. Andresen· 1 shared J. Brate· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersCell Biology

R. J. S. Orr

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

EcologybioRxivPreprintMay 9, 2021

Elucidating the diversity of microeukaryotes and epi-endophytes in the brown algal holobiome

M. F. M. Bjorbaekmo, J. Brodie, A. K. Krabberod…·D. Bass

This study investigates the eukaryome of seven brown algal species using high-throughput sequencing, revealing novel microeukaryotic diversity and highlighting their ecological importance.

DOI 10.1101/2021.05.09.443287

plant (other)metagenomics

𝕏 PostBluesky

Cell BiologybioRxivSep 18, 2020

Compartmentalization of mRNAs in the giant, unicellular green algae Acetabularia acetabulum

I. J. Andresen, R. J. S. Orr, K. Shalchian-Tabrizi, J. Brate

The paper uses RNA-seq to analyze mRNA distribution in Acetabularia acetabulum, finding localized mRNA pools and even distribution of transport-related transcripts.

DOI 10.1016/j.algal.2021.102440

plant (other)bulk RNA-seq

𝕏 PostBluesky

Evolutionary BiologybioRxivOct 8, 2017

Enigmatic Diphyllatea eukaryotes: Culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution

R. J. S. Orr, S. Zhao, D. Klaveness…·K. Shalchian-Tabrizi

The paper cultures Diphyllatea strains, amplifies full 18S rRNA genes using PacBio RS II, and identifies three clades, revealing two morphotypes and broader global distribution.

DOI 10.1186/s12862-018-1224-z

long-read sequencingdeep learning

𝕏 PostBluesky