Author

Kamil Kaminski

University of Warsaw

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Approach:deep learning· 3 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Stanisław Dunin-HorkawicziD· 4 shared Jan LudwiczakiD· 3 shared Małgorzata OrłowskaiD· 2 shared Rafał MadajiD· 2 shared Aleksander Winski· 1 shared Dariusz BartosikiD· 1 shared Kamil Krakowski· 1 shared Kamil Pawlicki· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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4 shared papersBioinformatics

Stanisław Dunin-HorkawiczORCID

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4 papers

Recent·Most cited

pLAST - a tool for rapid comparison and classification of bacterial plasmid sequences

Kamil Krakowski, Małgorzata Orłowska, Kamil Kaminski, Dariusz Bartosik, Stanisław Dunin-Horkawicz

pLAST improves plasmid classification by combining ORF similarity and gene neighborhood conservation, outperforming existing methods in detecting functional modules and types.

Bioinformatics · Jul 29, 2026Peer-reviewedBioinformatics

Applicability of AlphaFold2 in the modeling of dimeric, trimeric, and tetrameric coiled-coil domains

Rafał Madaj, Mikel Martínez-Goikoetxea, Kamil Kaminski, Jan Ludwiczak, Stanisław Dunin-Horkawicz

This paper evaluates AlphaFold2's ability to model coiled-coil domains, showing improved prediction of oligomeric states compared to previous methods.

Protein Science · Dec 17, 2024Peer-reviewedBioinformatics

AlphaFold2 captures the conformational landscape of the HAMP signaling domain

Aleksander Winski, Jan Ludwiczak, Małgorzata Orłowska, Rafał Madaj, Kamil Kaminski, Stanisław Dunin-Horkawicz

The paper uses AlphaFold2 to generate 5000 models of the HAMP domain, revealing its conformational variability and structural conservation across families.

Protein Science · Nov 27, 2023Peer-reviewedBioinformatics

pLM-BLAST - distant homology detection based on direct comparison of sequence representations from protein language models

Kamil Kaminski, Jan Ludwiczak, Kamil Pawlicki, Vikram Alva, Stanisław Dunin-Horkawicz

pLM-BLAST detects distant homology by comparing sequence embeddings from ProtT5, achieving accuracy comparable to HHsearch while being faster and capable of local alignments.

Bioinformatics · Sep 15, 2023Peer-reviewedBioinformatics