Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
5 papers
Recent·Most cited
Abhinav Nellore, Andrew E Jaffe, Jean-Philippe Fortin, José Alquicira-Hernández, Leonardo Collado-Torres, Siruo Wang, Robert A Phillips, Nishika Karbhari, Kasper D Hansen, Ben Langmead, Jeffrey T Leek
The paper analyzes human RNA-seq data from the SRA to identify unannotated splicing junctions and their tissue-specific expression, creating a resource called intropolis.
Genome Biology · Dec 30, 2016Peer-reviewedGenomics
Xin Li, Yun Liu, Tal Salz, Kasper D Hansen, Andrew P Feinberg
The paper analyzes DNA methylation and hydroxymethylation across normal and cancerous lung and liver tissues, revealing their roles in gene expression regulation and differential methylation regions.
Genome Research · Oct 13, 2016Peer-reviewedGenomics
Leonardo Collado-Torres, Abhinav Nellore, Kai Kammers, Shannon E Ellis, Margaret A Taub, Kasper D Hansen, Andrew E Jaffe, Ben Langmead, Jeffrey Leek
recount provides a large-scale, processed RNA-seq resource with tools for analysis, including differential expression and meta-analysis, using data from the Sequence Read Archive.
bioRxiv · Aug 8, 2016Genomics
Abhinav Nellore, Christopher Wilks, Kasper D Hansen, Jeffrey T Leek, Ben Langmead
Rail-dbGaP enables secure analysis of dbGaP-protected RNA-seq data in the cloud using Amazon Elastic MapReduce, with a spliced aligner tool and protocol for compliance with NIH guidelines.
bioRxiv · Mar 5, 2016Bioinformatics
Jean-Philippe Fortin, Kasper D Hansen
This paper shows that A/B compartments can be estimated from epigenetic data across multiple platforms in various cell types, including human cancers.
bioRxiv · Jun 3, 2015Genomics