Author

Leonardo Collado-Torres

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Andrew E Jaffe· 4 shared Abhinav NelloreiD· 3 shared Ben LangmeadiD· 3 shared Jeffrey T Leek· 3 shared José Alquicira-Hernández· 2 shared Kasper D Hansen· 2 shared Aine Fairbrother-BrowneiD· 1 shared Angeliki ZarkaliiD· 1 shared

Activity by Year

2015-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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4 shared papersGenomics

Andrew E Jaffe

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Author profile →

5 papers

Recent·Most cited

A molecular map of the living human brain from quantitative MRI

Melissa Grant‐Peters, George E. C. Thomas, Daan van Kruining, Louise A Huuki-Myers, Ruth Zhang, Jonathan Brenton, Hemanth R. Nelvagal, Angeliki Zarkali, James R Evans, Christina E. Toomey, Aine Fairbrother-Browne, Ivelina Dobreva, Kelsey D Montgomery, Joanne Lachica, Naomi Hannaway, , Mina Ryten

This paper introduces a non-invasive imaging framework combining qMRI and SRT to infer molecular features in neurodegeneration.

bioRxiv · Sep 24, 2025 · PreprintNeuroscience

Human splicing diversity across the Sequence Read Archive

Abhinav Nellore, Andrew E Jaffe, Jean-Philippe Fortin, José Alquicira-Hernández, Leonardo Collado-Torres, Siruo Wang, Robert A Phillips, Nishika Karbhari, Kasper D Hansen, Ben Langmead, Jeffrey T Leek

The paper analyzes human RNA-seq data from the SRA to identify unannotated splicing junctions and their tissue-specific expression, creating a resource called intropolis.

Genome Biology · Dec 30, 2016Peer-reviewedGenomics

recount: A large-scale resource of analysis-ready RNA-seq expression data

Leonardo Collado-Torres, Abhinav Nellore, Kai Kammers, Shannon E Ellis, Margaret A Taub, Kasper D Hansen, Andrew E Jaffe, Ben Langmead, Jeffrey Leek

recount provides a large-scale, processed RNA-seq resource with tools for analysis, including differential expression and meta-analysis, using data from the Sequence Read Archive.

bioRxiv · Aug 8, 2016Genomics

Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

Abhinav Nellore, Leonardo Collado-Torres, Andrew E Jaffe, José Alquicira-Hernández, Jacob Pritt, James Morton, Jeffrey T Leek, Ben Langmead

Rail-RNA efficiently and accurately aligns RNA-seq samples and generates coverage files, enabling population-level analysis of splicing and expression variation.

bioRxiv · Aug 12, 2015Bioinformatics

regionReport: Interactive reports for region-based analyses

Leonardo Collado-Torres, Andrew E Jaffe, Jeffrey T Leek

regionReport generates interactive genomic reports with quality checks and templates for analyzing RNA-seq differential expression results.

F1000Research · May 1, 2015Peer-reviewedBioinformatics