An amplicon-based nanopore sequencing workflow for rapid tracking of avian influenza outbreaks, France, 2020-2022
Guillaume Croville, Mathilda Walch, Aurélie Sécula, Laetitia Lèbre, Sónia Marina Silva, Fabien Filaire, Jean‐Luc Guérin
The paper describes an amplicon-based MinION sequencing workflow for rapid genetic typing of avian influenza viruses from field samples, showing links between outbreaks through phylogenetic analysis.
Frontiers in Cellular and Infection Microbiology · Jan 21, 2024Peer-reviewedGenomics