Author

Jean‐Luc Guérin

École Nationale Vétérinaire de ToulouseORCID 0000-0001-7770-4012Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:host-pathogen & immune response· 2 Assay:long-read sequencing· 2 Assay:metagenomics· 2 Organism:chicken / avian· 1 Research Focus:ecology & biodiversity· 1 Organism:multiple species· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Guillaume CrovilleiD· 4 shared Mathilda Walch· 3 shared Aurélie SéculaiD· 2 shared Sébastien SoubièsiD· 2 shared Albert PerlasiD· 1 shared Andrea Jimenez Pellicer· 1 shared Benjamin LinardiD· 1 shared Claire GuinatiD· 1 shared

Activity by Year

2024-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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Focal author (center)Selected co-authorORCID co-authorUnlinked name

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4 shared papersMicrobiology

Guillaume CrovilleORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

A novel coronavirus associated with enteritis in broiler chickens, France, 2025

Mattias Delpont, Nicolas Gaide, Vincent D. Blondel, Manuela Crispo, Benjamin Linard, Aurélie Sécula, Mathilda Walch, Lilou BORTOT, Elodie Durand, Isabelle Fourquaux, Léni Corrand, Sébastien Soubiès, Pierre Bessière, Guillaume Croville, Jean‐Luc Guérin

The paper identifies a novel gammacoronavirus causing enteritis in broiler chickens in France, distinct from known poultry coronaviruses.

bioRxiv · Jun 9, 2026 · PreprintMicrobiology

Duck Slurry as a Matrix for Avian Influenza Virus Surveillance and Genetic Characterization in Domestic Flocks

Clément Castille, Laura Lebouteiller, Mathilda Walch, Guillaume Croville, Jean‐Luc Guérin, Sébastien Soubiès

The paper evaluates duck slurry as a matrix for detecting avian influenza viruses and characterizing their genetics, finding high sensitivity and partial genomic data.

bioRxiv · Sep 18, 2025 · PreprintMicrobiology

Promising effects of duck vaccination against highly pathogenic avian influenza, France 2023-24

Claire Guinat, Lisa Fourtune, Sébastien Lambert, Eva Martin, Guillaume Gerbier, Andrea Jimenez Pellicer, Jean‐Luc Guérin, Timothée Vergne

The paper assesses duck vaccination in France and estimates it averted 314-756 outbreaks of highly pathogenic avian influenza, reducing epizootic size by 96-99%.

Emerging infectious diseases · Jun 24, 2025Peer-reviewedEcology

Latest RNA and DNA nanopore sequencing allows for rapid avian influenza profiling

Albert Perlas, Tim Reska, Guillaume Croville, Ferran Tarrés-Freixas, Jean‐Luc Guérin, Natàlia Majó, Lara Urban

The paper evaluates nanopore sequencing for rapid AIV profiling, showing its ability to accurately reconstruct viral genomes and detect RNA modifications.

Virus Evolution · Jan 1, 2025Peer-reviewedGenomics

An amplicon-based nanopore sequencing workflow for rapid tracking of avian influenza outbreaks, France, 2020-2022

Guillaume Croville, Mathilda Walch, Aurélie Sécula, Laetitia Lèbre, Sónia Marina Silva, Fabien Filaire, Jean‐Luc Guérin

The paper describes an amplicon-based MinION sequencing workflow for rapid genetic typing of avian influenza viruses from field samples, showing links between outbreaks through phylogenetic analysis.

Frontiers in Cellular and Infection Microbiology · Jan 21, 2024Peer-reviewedGenomics