Author

Lincoln D Stein

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Asher D Cutter· 1 shared Cristel G. Thomas· 1 shared Gaddy Getz· 1 shared Jan O Korbel· 1 shared Joel Weiser· 1 shared Joshua M Stuart· 1 shared Juri Reimand· 1 shared Leonid KruglyakiD· 1 shared

Activity by Year

2015-2017 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperGenomics

Asher D Cutter

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Pan-cancer analysis of whole genomes

Peter J Campbell, Gaddy Getz, Joshua M Stuart, Jan O Korbel, Lincoln D Stein

This paper presents an integrative analysis of over 2,600 whole cancer genomes across 39 tumor types, identifying non-coding driver events and tumor evolution patterns.

bioRxiv · Jul 12, 2017 · PreprintCancer Biology

Impact of knowledge accumulation on pathway enrichment analysis

Lina Wadi, Mona Meyer, Joel Weiser, Lincoln D Stein, Juri Reimand

The paper examines how evolving gene annotations affect pathway enrichment analysis, finding that outdated software misses most current enrichments.

bioRxiv · Apr 19, 2016Bioinformatics

Full-genome evolutionary histories of selfing, splitting and selection in Caenorhabditis

Cristel G. Thomas, Wei Wang, Richard Jovelin, Rajarshi Ghosh, Tatiana Lomasko, Quang Trinh, Leonid Kruglyak, Lincoln D Stein, Asher D Cutter

This study uses whole-genome sequencing of C. briggsae isolates to infer population history, selection effects, and speciation dynamics across different geographic groups.

Genome Research · Mar 17, 2015Peer-reviewedGenomics