Author

Lucia Reynoso

Chan Zuckerberg Initiative (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metagenomics· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Jennifer C. TangiD· 2 shared Katrina KalantariD· 2 shared Olivia Holmes· 2 shared Abigail Leigh GlascockiD· 1 shared Amogelang R. RaphenyaiD· 1 shared Amy J. PickeringiD· 1 shared Andrew G. McArthuriD· 1 shared Andrey O. Kislyuk· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersMicrobiology

Jennifer C. TangORCID

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Author profile →

2 papers

Recent·Most cited

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline

Dan Lu, Katrina Kalantar, Victoria T. Chu, Abigail Leigh Glascock, Estella Sanchez Guerrero, Nina Bernick, Xochitl Butcher, Kirsty Ewing, Elizabeth Fahsbender, Olivia Holmes, Erin Hoops, Ann E. Jones, Ryan Lim, Suzette McCanny, Lucia Reynoso, , Charles Langelier

The paper develops an open-source, cloud-based tool for detecting pathogens and antimicrobial resistance genes in metagenomic and whole-genome sequencing data, demonstrating its application across clinical and environmental studies.

bioRxiv · Apr 12, 2024 · PreprintMicrobiology

IDseq - An Open Source Cloud-based Pipeline and Analysis Service for Metagenomic Pathogen Detection and Monitoring

Katrina Kalantar, Tiago Rodrigues De Carvalho, Charles F. A. de Bourcy, Boris Dimitrov, Greg Dingle, Rebecca Egger, Julie Han, Olivia Holmes, Yun-Fang Juan, Ryan King, Andrey O. Kislyuk, Michael F. Lin, Maria Mariano, Todd Morse, Lucia Reynoso, , Joseph L. DeRisi

IDseq provides a cloud-based metagenomics pipeline for pathogen detection, enabling analysis of mNGS data with tools for taxonomic assignment and novel pathogen identification.

GigaScience · Oct 1, 2020Peer-reviewedBioinformatics