Author

Jennifer C. Tang

Chan Zuckerberg Initiative (United States)ORCID 0000-0001-9491-5022Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Katrina KalantariD· 3 shared Boris DimitroviD· 2 shared Charles F. A. de BourcyiD· 2 shared Charles LangelieriD· 2 shared Cristina M. TatoiD· 2 shared James WangiD· 2 shared Jonathan SheuiD· 2 shared Joseph L. DeRisiiD· 2 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

Katrina KalantarORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintApr 12, 2024

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline

Dan Lu, Katrina Kalantar, Victoria T. Chu…·Charles Langelier

The paper develops an open-source, cloud-based tool for detecting pathogens and antimicrobial resistance genes in metagenomic and whole-genome sequencing data, demonstrating its application across clinical and environmental studies.

10 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsGigaSciencePeer-reviewedOct 1, 2020

IDseq - An Open Source Cloud-based Pipeline and Analysis Service for Metagenomic Pathogen Detection and Monitoring

Katrina Kalantar, Tiago Rodrigues De Carvalho, Charles F. A. de Bourcy…·Joseph L. DeRisi

IDseq provides a cloud-based metagenomics pipeline for pathogen detection, enabling analysis of mNGS data with tools for taxonomic assignment and novel pathogen identification.

410 citationstop 1%

metagenomicsstatistical model

𝕏 PostBluesky

GenomicsmBioPeer-reviewedDec 16, 2019

Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive Chikungunya virus outbreak and other unrealized pathogens

Senjuti Saha, Akshaya Ramesh, Katrina Kalantar…·Joseph L. DeRisi

This study uses metagenomic sequencing to identify pathogens in pediatric meningitis cases in Bangladesh, revealing a Chikungunya virus outbreak and other previously undetected causes.

97 citationstop 1%

humanmetagenomics

𝕏 PostBluesky