Author

Erin Hoops

Chan Zuckerberg Initiative (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1

Frequent Co-Authors

Abigail Leigh GlascockiD· 1 shared Amogelang R. RaphenyaiD· 1 shared Amy J. PickeringiD· 1 shared Andrew G. McArthuriD· 1 shared Andrew SweetiD· 1 shared Ann E. JonesiD· 1 shared Ashley G. AndersoniD· 1 shared Brian P. AlcockiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

Abigail Leigh GlascockORCID

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Author profile →

2 papers

Recent·Most cited

inTRACKtive - A Web-Based Tool for Interactive Cell Tracking Visualization

Teun A.P.M. Huijben, Ashley G. Anderson, Andrew Sweet, Erin Hoops, Connor Larsen, Kyle Awayan, Jordão Bragantini, Merlin Lange, Chi‐Li Chiu, Löıc A. Royer

inTRACKtive provides a web-based tool for interactive visualization and sharing of large 3D cell tracking datasets without requiring software installation or data downloads.

Nature Methods · Aug 25, 2025Peer-reviewedDevelopmental Biology

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline

Dan Lu, Katrina Kalantar, Victoria T. Chu, Abigail Leigh Glascock, Estella Sanchez Guerrero, Nina Bernick, Xochitl Butcher, Kirsty Ewing, Elizabeth Fahsbender, Olivia Holmes, Erin Hoops, Ann E. Jones, Ryan Lim, Suzette McCanny, Lucia Reynoso, , Charles Langelier

The paper develops an open-source, cloud-based tool for detecting pathogens and antimicrobial resistance genes in metagenomic and whole-genome sequencing data, demonstrating its application across clinical and environmental studies.

bioRxiv · Apr 12, 2024 · PreprintMicrobiology