Author

M. C. Ahmed

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3

Signature Assays, Organisms & Methods

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Research Focus:protein folding & dynamics· 3 Approach:statistical model· 2 Approach:Bayesian inference· 1 Approach:mechanistic / dynamical model· 1 Assay:protein structure· 1 Assay:structural biology· 1

Frequent Co-Authors

K. Lindorff-Larsen· 3 shared A. E. Langkilde· 1 shared A. Jussupow· 1 shared B. B. Kragelund· 1 shared C. Camilloni· 1 shared E. A. Newcombe· 1 shared E. Papaleo· 1 shared L. K. Skaanning· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 23 mutual co-author links

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3 shared papersBiophysics

K. Lindorff-Larsen

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Author profile →

3 papers

Recent·Most cited

Refinement of α-synuclein ensembles against SAXS data: Comparison of force fields and methods

M. C. Ahmed, L. K. Skaanning, A. Jussupow, E. A. Newcombe, B. B. Kragelund, C. Camilloni, A. E. Langkilde, K. Lindorff-Larsen

The paper compares force fields and methods for refining α-synuclein ensembles using SAXS data, showing that accurate ensembles require compatible simulations and experimental integration.

bioRxiv · Jan 15, 2021Biophysics

Analyzing and comparing the radius of gyration and hydrodynamic radius in conformational ensembles of intrinsically disordered proteins

M. C. Ahmed, R. Crehuet, K. Lindorff-Larsen

The paper calculates radius of gyration and hydrodynamic radius from computationally generated conformational ensembles of intrinsically disordered proteins and integrates SAXS and NMR data using Bayesian/Maximum Entropy methods.

bioRxiv · Aug 15, 2019 · PreprintBiophysics

How well do force fields capture the strength of salt bridges in proteins?

M. C. Ahmed, E. Papaleo, K. Lindorff-Larsen

This study benchmarks molecular dynamics simulations of salt bridge stability in GB1 using NMR data, finding that simulations overestimate salt bridge stability compared to experimental results.

bioRxiv · Feb 27, 2018Biophysics