M. Carballo-Pacheco

Multiple macroecological laws do characterize various aspects of microbiota dynamics

The paper clarifies that macroecological laws describe microbiota dynamics with specific scaling exponents and shows these relationships are not due to external factors but internal dynamics.

Molecular dynamics simulations of protein aggregation: protocols for simulation setup and analysis with Markov state models and transition networks

The paper provides protocols for setting up and analyzing molecular dynamics simulations of peptide aggregation using GROMACS, including tools for determining oligomer size and deriving Markov state models and transition networks.

Phenotypic delay in the evolution of bacterial antibiotic resistance: mechanistic models and their implications

The paper investigates phenotypic delay in bacterial antibiotic resistance evolution using simulations and theory, showing that dilution of sensitive molecules and effective polyploidy cause delay, affecting survival and mutation rate estimates.

Receptor crosstalk improves concentration sensing of multiple ligands

This study shows that receptor crosstalk can enhance precision in sensing multiple ligand concentrations by utilizing non-cognate ligand binding events.