Author

M. Fujii

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3 Pathology· 1

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 2 Approach:statistical model· 2 Approach:biophysical modeling· 1 Assay:DNA methylation· 1 Assay:Hi-C· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Approach:mechanistic / dynamical model· 1

Frequent Co-Authors

A. Awazu· 3 shared F. Hayashi· 1 shared H. Yamashita· 1 shared K. Morigaki· 1 shared K. S. Nara· 1 shared K. Tazawa· 1 shared N. Kawashima· 1 shared P. Han· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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3 shared papersBiophysics

A. Awazu

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

MicroRNA-27a-5p downregulates the expression of proinflammatory cytokines in lipopolysaccharide-stimulated human dental pulp cells via NF-κB signaling pathway

S. Wang, N. Kawashima, P. Han, K. S. Nara, Z. Yu, K. Tazawa, M. Fujii, T. Q. Kieu, T. Okiji

This study shows miR-27a-5p reduces proinflammatory cytokines in LPS-stimulated hDPCs by inhibiting NF-κB signaling through targeting TAB1.

bioRxiv · Apr 10, 2024Pathology

Mathematical model of chromosomal dynamics during DNA double strand break repair in budding yeast

S. Nakahata, M. Fujii, A. Awazu

The paper develops mathematical models to simulate chromosomal dynamics during DNA double-strand break repair in budding yeast, identifying histone degradation and repair protein rigid structures as key factors in relocating damaged loci to the nuclear periphery.

bioRxiv · Feb 1, 2022Biophysics

Epigenetic-structural changes in X chromosomes promote Xic pairing during early differentiation from mouse embryonic stem cells

T. Komoto, M. Fujii, A. Awazu

The paper develops a molecular dynamics model to study how epigenetic-structural changes in X chromosomes drive Xic pairing during early differentiation of mouse embryonic stem cells.

bioRxiv · Oct 25, 2021Biophysics

Affinity of rhodopsin to raft enables the aligned oligomer formation from dimers: Coarse-grained molecular dynamics simulation of disk membranes

Y. Kaneshige, F. Hayashi, K. Morigaki, H. Yamashita, M. Fujii, A. Awazu

This study uses coarse-grained molecular dynamics simulations to show that raftophilic H1/H8 rhodopsin dimers form aligned rows stabilized by lipid rafts, enhancing phototransduction efficiency.

bioRxiv · Nov 21, 2019Biophysics