Author

M. Zgarbova

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

J. Sponer· 2 shared P. Jurecka· 2 shared F. Cerny· 1 shared G. Bussi· 1 shared J. Salomon· 1 shared M. Krepl· 1 shared M. Otyepka· 1 shared P. Banas· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBiophysics

J. Sponer

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3 papers

Recent·Most cited

Continuous B- to A- Transition in Protein-DNA Binding - How Well Is It Described by Current AMBER Force Fields?

P. Jurecka, M. Zgarbova, F. Cerny, J. Salomon

This study evaluates how current AMBER force fields model the A/B DNA transition in protein-DNA complexes, finding underestimation of A-like intermediate states' stability.

bioRxiv · Jan 13, 2022 · PreprintBiophysics

Z-DNA as a Touchstone for Additive Empirical Force Fields and a Refinement of the Alpha/Gamma DNA torsions for AMBER

M. Zgarbova, J. Sponer, P. Jurecka

The paper improves AMBER force fields by refining gamma DNA torsions to better describe Z-DNA and non-canonical DNA structures.

bioRxiv · Jul 11, 2021Biophysics

IMPROVING THE PERFORMANCE OF THE AMBER RNA FORCE FIELD BY TUNING THE HYDROGEN-BONDING INTERACTIONS

P. Kuhrova, V. Mlynsky, M. Zgarbova, M. Krepl, G. Bussi, R. B. Best, M. Otyepka, J. Sponer, P. Banas

This paper improves the AMBER RNA force field by tuning hydrogen-bonding interactions to better match experimental data in RNA folding simulations.

bioRxiv · Jan 18, 2019Biochemistry