Author

Magdalena Huebner

Queen Mary University of London

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

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Approach:benchmark study· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

Aaron WenteleriD· 1 shared Alex Hawkins‐HookeriD· 1 shared Amaya Gallagher-SyediD· 1 shared Cesar Miguel Valdez CordovaiD· 1 shared Martina OcchettaiD· 1 shared Nikhil BransoniD· 1 shared Siu Pui Chung· 1 shared Victor CureaniD· 1 shared

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2024-2024 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Aaron WentelerORCID

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1 paper

Recent·Most cited

PertEval-scFM: Benchmarking Single-Cell Foundation Models for Perturbation Effect Prediction

Aaron Wenteler, Martina Occhetta, Nikhil Branson, Victor Curean, Magdalena Huebner, William Dee, William Connell, Siu Pui Chung, Alex Hawkins‐Hooker, Yasha Ektefaie, Cesar Miguel Valdez Cordova, Amaya Gallagher-Syed

This study benchmarks zero-shot single-cell foundation model embeddings for perturbation effect prediction and finds they do not consistently improve over baseline models under distribution shift.

bioRxiv · Oct 2, 2024 · PreprintBioinformatics