Author

Maria Ntemourtsidou

University of Cambridge

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:phylogenetics / evolution· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Organism:E. coli· 1

Frequent Co-Authors

R. Andrés FlotoiD· 2 shared Aaron WeimanniD· 1 shared Adam M. DinaniD· 1 shared Artur Duque RossiiD· 1 shared Christopher RuisiD· 1 shared David C. Abelson· 1 shared Divya Arora· 1 shared John A. LeesiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

R. Andrés FlotoORCID

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2 papers

Recent·Most cited

Mutational spectra reveal influenza virus transmission routes and adaptation

Christopher Ruis, Artur Duque Rossi, Theo Sanderson, Marta Matuszewska, Maria Ntemourtsidou, V. Mendes, Pedro Henrique Monteiro Torres, Julian Parkhill, Thomas P. Peacock, R. Andrés Floto

This study uses mutational spectra to infer influenza virus transmission routes and adaptive mutations enabling sustained respiratory transmission.

bioRxiv · Nov 26, 2025 · PreprintMicrobiology

A contextualised protein language model reveals the functional syntax of bacterial evolution

Maciej Wiatrak, David C. Abelson, Roman Mikhaylenko, Ramon Viñas Torné, Maria Ntemourtsidou, Adam M. Dinan, Divya Arora, Samuel Horsfield, John A. Lees, Maria Brbić, Aaron Weimann, R. Andres Floto

Trained on over 1.3 million bacterial genomes represented as ordered protein sequences, the transformer foundation model Bacformer predicts protein interactions, operons, essentiality, and phenotypes while generating trait-conditioned synthetic proteomes.

bioRxiv · Jul 20, 2025 · PreprintMicrobiology✦ In-depth digest