Author
University of Cambridge
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
3 papers
Recent·Most cited
Samuel Horsfield, Maciej Wiatrak, James O. McInerney…·John A. Lees
This paper trains species-specific transformer models for bacterial genomic surveillance, showing they can cluster genomes, identify emerging lineages, and predict antibiotic resistance gene uptake.
Maciej Wiatrak, David C. Abelson, Roman Mikhaylenko…·R. Andres Floto
Trained on over 1.3 million bacterial genomes represented as ordered protein sequences, the transformer foundation model Bacformer predicts protein interactions, operons, essentiality, and phenotypes while generating trait-conditioned synthetic proteomes.
Martin Hunt, Marcelo D. T. Torres, Nabil-Fareed Alikhan…·Zamin Iqbal
A uniformly processed set of 2,440,377 bacterial and archaeal genomes with search tools and annotations, plus an AI-mined peptide set yielding ATB20, active in a mouse skin infection model.