Author

Mariah Hassan

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Organism:non-human primate· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Duane R. WesemanniD· 1 shared Gaspar A. Pacheco· 1 shared Hildreth Robert FrostiD· 1 shared Jessica W. Chen· 1 shared Meydan Kronrod· 1 shared Shahab SaghaeiiD· 1 shared Sydney K. Caldwell· 1 shared Toby B. LanseriD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Duane R. WesemannORCID

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1 paper

Recent·Most cited

Biological foundation models illuminate annotation blind spots in evolutionarily divergent genomes

Toby B. Lanser, Sydney K. Caldwell, Gaspar A. Pacheco, Jessica W. Chen, Shahab Saghaei, Mariah Hassan, Meydan Kronrod, Duane R. Wesemann, Hildreth Robert Frost

The paper introduces a hybrid annotation framework that improves cross-species protein similarity assignment and gene annotation in evolutionarily divergent genomes, expanding structural catalogs and improving single-cell immune cell state annotation in sea lamprey.

bioRxiv · May 16, 2026 · PreprintBioinformatics