Author

Mark Hopkins

Reed College

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Biology Disciplines

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Bioinformatics· 1

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Approach:deep learning· 1 Organism:human· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Research Focus:sequence-to-function modeling· 1 Approach:transformer / foundation model· 1 Organism:yeast· 1

Frequent Co-Authors

Ananthan NambiariD· 1 shared Anna RitziD· 1 shared Maeve Heflin· 1 shared Sergei MasloviD· 1 shared Simon LiuiD· 1 shared

Activity by Year

2020-2020 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Ananthan NambiarORCID

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1 paper

Recent·Most cited

Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks

Ananthan Nambiar, Simon Liu, Mark Hopkins, Maeve Heflin, Sergei Maslov, Anna Ritz

A RoBERTa-style Transformer, pre-trained on 450K Swiss-Prot sequences in 18 hours on 4 V100 GPUs, rivals DeepFam at family classification and beats PIPR at human protein-protein interaction prediction.

bioRxiv · Jun 15, 2020 · PreprintBioinformatics✦ In-depth digest