Author

Martina Alini

University of Cambridge

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:spatial transcriptomics· 2 Assay:ATAC-seq· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

Carla Boquetale· 2 shared Dario BressaniD· 2 shared Giorgia BattistoniiD· 2 shared Nicole Hemmer· 2 shared Shankar BalasubramanianiD· 2 shared Abigail SheaiD· 1 shared Alejandra BrunaiD· 1 shared Ali Dariush· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Carla Boquetale

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Author profile →

2 papers

Recent·Most cited

Serval: A modular framework for decoding imaging based spatial transcriptomics data

Jenkin Tsui, Naila Adam, Woongcheol Choi, Luna Y Liu, C. Cárcamo Flores, Shadi Ansari, Esther Kong, Yukta Thapliyal, Hakwoo Lee, Shahid Haider, Issac Von Riedemann, Ciara H. O’Flanagan, Mohammad Al Sa’d, Bruno Albuquerque, Hamid Raza Ali, , Nicholas A. Walton

Serval is a modular framework for decoding spatial transcriptomics data that introduces Cosine, a method improving transcript recovery and correlation with expression references.

Bioinformatics · Sep 27, 2026Peer-reviewedBioinformatics

Spatially tuneable multi-omics sequencing using light-driven combinatorial barcoding of molecules in tissues

Giorgia Battistoni, Sito Torres-Garcia, Chee Ying Sia, Silvia Corriero, Carla Boquetale, Elena Williams, Martina Alini, Nicole Hemmer, Shankar Balasubramanian, Benjamin Czech, Gregory J. Hannon, Dario Bressan

The paper introduces BALI, a method for spatially tuneable multi-omic profiling using light-driven combinatorial barcoding, demonstrating its application on mouse brain tissue.

bioRxiv · May 20, 2024 · PreprintGenomics