Author

Nicole Hemmer

University of Oxford

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1 Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell signaling & trafficking· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Organism:mouse· 2 Assay:spatial transcriptomics· 2 Assay:ATAC-seq· 1 Approach:benchmark study· 1

Frequent Co-Authors

Carla Boquetale· 2 shared Dario BressaniD· 2 shared Giorgia BattistoniiD· 2 shared Katarzyna Chwalenia· 2 shared Martina Alini· 2 shared Matthew J. A. WoodiD· 2 shared Shankar BalasubramanianiD· 2 shared Thomas C. RobertsiD· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Carla Boquetale

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Serval: A modular framework for decoding imaging based spatial transcriptomics data

Jenkin Tsui, Naila Adam, Woongcheol Choi, Luna Y Liu, C. Cárcamo Flores, Shadi Ansari, Esther Kong, Yukta Thapliyal, Hakwoo Lee, Shahid Haider, Issac Von Riedemann, Ciara H. O’Flanagan, Mohammad Al Sa’d, Bruno Albuquerque, Hamid Raza Ali, , Nicholas A. Walton

Serval is a modular framework for decoding spatial transcriptomics data that introduces Cosine, a method improving transcript recovery and correlation with expression references.

Bioinformatics · Sep 27, 2026Peer-reviewedBioinformatics

Toward a model of uORF-mediated translational control: An integrated bioinformatic and experimental approach

Britt Hanson, Nenad Svrzikapa, Ning Feng, Hans J. Friedrichsen, Angus J. Lennaárd, Rushdie Abuhamdah, Nicole Hemmer, Katarzyna Chwalenia, Matthew Drake, Yahya E. Jad, Samir EL Andaloussi, Matthew J. A. Wood, Thomas C. Roberts

The paper combines experimental and computational methods to model how uORFs regulate translation, identifying key features and interactions that influence their repressive activity.

bioRxiv · Jul 28, 2025 · PreprintBiochemistry

Myonuclear domain-associated and central nucleation-dependent spatial restriction of dystrophin protein expression in a novel DMD mouse model

Katarzyna Chwalenia, Vivi-Yun Feng, Nicole Hemmer, John C. W. Hildyard, Liberty E. Roskrow, Richard J. Piercy, Eric T. Wang, Annemieke M Aartsma-Rus, Maaike van Putten, Matthew J. A. Wood, Thomas C. Roberts

This paper introduces a novel DMD mouse model with non-uniform dystrophin expression and shows that partial dystrophin expression protects against muscle pathology.

bioRxiv · Jul 24, 2025 · PreprintCell Biology

Spatially tuneable multi-omics sequencing using light-driven combinatorial barcoding of molecules in tissues

Giorgia Battistoni, Sito Torres-Garcia, Chee Ying Sia, Silvia Corriero, Carla Boquetale, Elena Williams, Martina Alini, Nicole Hemmer, Shankar Balasubramanian, Benjamin Czech, Gregory J. Hannon, Dario Bressan

The paper introduces BALI, a method for spatially tuneable multi-omic profiling using light-driven combinatorial barcoding, demonstrating its application on mouse brain tissue.

bioRxiv · May 20, 2024 · PreprintGenomics